Hi Bogdan, Please see these two previously answered mailing list questions:
https://lists.soe.ucsc.edu/pipermail/genome/2010-February/021412.html https://lists.soe.ucsc.edu/pipermail/genome/2007-August/014337.html If by non-redundant exons you mean that you don't want exons of splice variants, then you may want to first obtain a list of transcripts from the knownCanonical table using the Table Browser. To do this, select "knownCanonical" from the table drop down menu, then "selected fields from primary related tables" as the output format. Enter a file name in the output file box and click "get output". On the following page, select "transcripts" then "get output". This will provide you with a file containing all transcript names. Then follow instructions on the previous mailing list questions to obtain the exons, with the additional step of uploading the list of transcripts (click "upload list" next to identifiers). I hope this helps. Please contact us again at [email protected] if you have any further questions. Best, Luvina --- Luvina Guruvadoo UCSC Genome Bioinformatics Group Bogdan Tanasa wrote: > Dear all, > > please could you let me know a way to retrieve the non-redundant set of > exons of UCSC genes of hg18. > > thanks, > > bogdan > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
