Hi Jing, As it turns out, the identifier ENST00000515486 (release 59) has been retired from the Ensembl database (see: http://uswest.ensembl.org/Homo_sapiens/Gene/Summary?g=ENST00000515486;db=core). We have recently updated the Ensembl Genes table with release 61, which is why this identifier is not being recognized. As for the mysql entry, is it be possible you queried an older version of the hg19 database?
Though Ensembl has retired ENST00000515486, the ENCODE Gencode Genes table still contains information on this identifier which may be useful for you. Using the Table Browser, set the following: group: Genes and Gene Prediction Tracks, track: Gencode Genes, table: Gencode Manual (wgEncodeGencodeManualIV4). I hope this helps. Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group Jing Xia wrote: > Hi there, > > The hg19 ensGene table seems not able to recognize certain gene's > identifier, but through mysql access, the identifier is in the ensGene > table, field name. Could you please provide me some helps on that? > > E.g ENST00000515486 > > Thank you very much, > Jing Xia > -- > Graduate student > Computer Science and Engineering, > Washington University in St Louis > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
