Hi Tom,

Is the documentation that you feel is insufficient the information at 
the "Explain failure 
messages"(http://genome.ucsc.edu/cgi-bin/hgLiftOver?hglft_errorHelp=1) 
link that displays when an input region fails? If so, then perhaps the 
following previously answered mailing list question and the wiki page 
referenced within it will be help with background about the terms used 
in those short explanations:

https://lists.soe.ucsc.edu/pipermail/genome/2008-March/015810.html

I hope this information helps. Please don't hesitate to contact the mail 
list again if you have any further questions.

Katrina Learned
UCSC Genome Bioinformatics Group

Tom Brands wrote, On 03/11/11 01:40:
> Hi,
>
> I was wondering if you could perhaps expand on the description given at
> liftover utility on your website, concerning the "XX in new" messages.
> I'm rather new to genome remapping and so the single line description
> given is insufficient.
>
> Thank you in advance for your time.
>
> Kind regards,
>
> Tom Brands
>
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