Hi Sus, One way to see the Ensembl version for a particular track is to open the track in the Genome Browser, click on an item, and look for the track version in the title of that page. You will see something like this (from cavPor3):
Ensembl Gene Predictions (ENSCPOT00000004711 - Ensembl 61) If you would rather get this information from a table, the one you need is called trackVersion, and it's in the hgFixed database. To get to it in the Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables), select any assembly from the drop-down menus, then: group: all tables database: hgFixed table: hgFixed.trackVersion If you like, you can add a filter so that only the assemblies you are interested in are included. Hit "filter: create" and then paste a space-separated list into the "db does match box": cavPor3 oryCun2 canFam2 bosTau4 equCab2 susScr2 You can also limit the fields to retrieve from the table with "output format: selected fields..." You will probably want to include db, name, version, and updateTime. When you hit "get output" you will see all versions of the track for the assemblies you entered. The one with the latest date is the current version. -- Brooke Rhead UCSC Genome Bioinformatics Group On 03/13/11 11:12, Sds Sd wrote: > Hello to the UCSC staff, > > I have difficulties in finding the correct Ensembl versions to which the tables ensGene and ensGtp refer to.So is there a page which gives the current versions ? > Specifically,I'm interested in the current versions for cavPor3 and oryCun2 (in fact,it would be nice to know the corresponding versions also for canFam2, bosTau4, equCab2, susScr2). > Thanks, > Sus > > > > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
