Hello, A useful tool to retrieve this information is the Table Browser. From the main page, click on "Tables" in the blue navigation bar. After selecting a clade, genome, and assembly of your choice, set the following:
group: Genes and Gene Prediction Tracks track: UCSC Genes (or select track of your choice) table: knownGene (or select table of your choice) region: select "position" and paste in the position (|chr7:52823164-52830527)| output format: sequence If you want the output sent to a file, enter a filename in "output file", or leave it blank to keep the output in the browser. Click "get output". You will be directed to another page, select "genomic". From here, you can select the information you would like to retrieve (for example: 5' UTR Exons, CDS Exons, 3" UTR Exons, etc). Once you have made your selection, click "get sequence". Please note, this tool only works for 1000 positions or less. If you have more than 1000, you will need to use a custom track. For more information on how to use the Table Browser, please see: http://genome.ucsc.edu/cgi-bin/hgTables#Help I hope this helps. If you have any further questions, please contact us again at [email protected]. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group [email protected] wrote: > Hi, all! > Now I have get the genomic coordinates of a transcript, such as > > chr7 52823164 52830527 > > I want to get the splicing information of this region, including "exon > count", "exon sizes", "exon starts" or something may be equal to these. > How do I get these? > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
