Hi Shamsher, Are you trying to do a lift over from, say, hg19 (or some other assembly) to hg18? (i.e. you have coordinates and IDs from one assembly and you're trying to find them in another?). What assembly are you starting with? With a little more information, I can better answer your question.
Thanks, Greg On 3/16/11 4:24 PM, shamsher jagat wrote: > > What I have is Genebank accession Id like AY293855 - Chr no 6 and > start 140618 and stop 140769 so I want to find out corresponding > genomic coordinates in Hg18. > I dont see any option in the Table- like that Am I missing something? > Thanks > > On Wed, Mar 16, 2011 at 3:19 PM, Greg Roe <[email protected] > <mailto:[email protected]>> wrote: > > Hi Shamsher, > > It is possible, but it depends on what time of gene identifiers > you have. You should take a look at our table browser: > http://genome.ucsc.edu/cgi-bin/hgTables > > For example, if you have refSeq IDs, formatted like > "NM_001139466", you can select the desired assembly, group: genes, > track: refSeq, and paste your list of IDs in using the > identifiers: 'paste list' button, and then click 'get output', > you'll have the info you want for your IDs. > > Please let us know if you have any additional questions. > - > Greg Roe > UCSC Genome Bioinformatics Group > > > > On 3/16/11 1:44 PM, shamsher jagat wrote: > > Is it possible to extract genomic coordinates If I have gene > accession ID > Chr stat and end position. Any pointer will be helpful. > > Thanks. > _______________________________________________ > Genome maillist - [email protected] > <mailto:[email protected]> > https://lists.soe.ucsc.edu/mailman/listinfo/genome > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
