Hi Hani, The information you are requesting can be retrieved using the Table Browser. Click on "Tables" on the blue bar on the top of the main page and make the following selections:
clade: Mammal genome: Human assembly: hg19 group: Genes and Gene Prediction Tracks track: RefSeqGenes table: refGene region: genome filter: click 'create' then in the 'name DOES match' field type: NR_* output format: select fields from primary and related tables output file: if you would rather have the results saved to a file instead of displaying in the browser window, enter the name you would like the output file to have, otherwise, leave blank file type returned: plain text Click "get output". From here, select the following: name, chrom, strand. Click "get output". This will provide a list of non-coding RNA names, positions, and strands. To retrieve sequences, go back to the table browser and set the same settings, except set 'output format' to 'sequence'. I hope this helps. Feel free to contact us again at [email protected] if you have further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group Hani Choudhry wrote: > Dear UCSC, > It is my pleasure to contact you. I am a PhD student, working on non-coding > RNA regulation in cancer, in particular long non-coding RNA. > I am wondering if you can help in downloading all Human long non-coding RNA > list (name, Chromosomal location, strand and sequences) based on “NCBI 37/ > Hg19” from your website?! > This information will be very useful for my PhD project and I will be greatly > appreciated your help. > Thanks for your attention and look forward to your reply soon. > Sincerely, > Hani > > .......................................................................... > > Hani Choudhry, > > Genomic Research Lab > > Wellcome Trust Centre of Human Genetics > > Nuffield Dept of Clinical Medicine > > University of Oxford > > Oxford- UK > > Lab tel: +44-1865287519 > > Mobile: +44-7771219664 > > Email: [email protected]<mailto:[email protected]> > _______________________________________________ > Genome-mirror mailing list > [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome-mirror > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
