Hi Ashwin, If the original file format is 0-based, and it is converted to a bed format it will remain 0-based. Please see this previously answered question to help clarify when to expect 0-based start coordinates vs. 1-based start coordinates:
https://lists.soe.ucsc.edu/pipermail/genome/2010-September/023471.html Hope this helps! Please contact the mailing list if you have further questions. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "ashwin Vishnuvardhana" <[email protected]> To: [email protected] Sent: Thursday, March 17, 2011 1:45:33 PM Subject: [Genome] zero based vs one based Hi i would like to know when any file which has format of zero based is converted to.bed format does it change the format or remain as original file. For Eg: i have .code files which are zero based and want to convert to .bed format in order to run liftover program. thanks Vish _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
