Dear Corey, Please take a look at the schema links on the downloads page you provided: http://genome.ucsc.edu/cgi-bin/hgFileUi?g=wgEncodeBroadHistone
This should answer your questions about the BED6+3 format. Hope this helps! If you have further questions, please contact the mailing list. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Corey Schaninger" <[email protected]> To: [email protected] Sent: Wednesday, March 16, 2011 5:38:49 PM Subject: [Genome] .broadPeak .bed file format Hello, I¹m interested in using the ENCODE/Broad Institute Histone Modification ChIP-seq data available on the UCSC Genome Browser at: http://genome.ucsc.edu/cgi-bin/hgFileUi?g=wgEncodeBroadHistone. However, the peak data is in a .broadPeak file type that appears to be a non-standard .bed format. Could you tell me the header information for these files? Thank you! Corey Schaninger Graduate Student Smyth Lab, UC Irvine _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
