Hi Andrea, You're correct as to how you would do this. You would create two custom tracks and do an intersection of them with the table browser, which is possible.
Please don't hesitate to contact the mail list again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group Andrea Edwards wrote, On 3/18/2011 1:41 PM: > Hi > > Please could you tell me the easiest way to UCSC table browser determine > if a novel SNP is in > a) a gene > b) an exon > > For known SNPs I can create a custom track of genes or exons and then > look for overlap with SNP table. > > How would i do this with novel SNPs (by novel i mean not in dbSNP)? This > seems to involve the interesection of 2 custom tracks which I don't > think is possible? > > I have seen how to do this on galaxy but was wondering if i could do it > directly with the table browser > > thanks a lot > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
