Hello all, I've downloaded information from the MySQL server via the command:
echo "use hg19; select rg.name, rg.chrom, rg.strand, rg.txStart, rg.txEnd, rg.exonStarts, rg.exonEnds from refGene rg;" | mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -B > hg19_refseq_positions.txt There are several refseq IDs that do not have entries in this file, but if you put that refseq ID into the browser will get a result. NM_001081472, NM_001144763, NM_001144765, NM_001145027, NM_002978, NM_020359, NM_022564, NM_130389, NM_152300, NM_152929, NM_152930, NM_173164, NR_001444 How does the genome browser have results for these refseq IDs but the refGene table does not contain entries for them? How do I get positions for these refseq IDs if they're being retrieved from a table other than refGene? Thanks, Denise _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
