Hi John, It is not possible for the *ToBig* utilities to use STDIN and STDOUT, as they need to do two passes over the file.
If you have any further questions, please feel free to contact us again at [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group John Herbert wrote on 3/22/11 7:53 AM: > Dear UCSC, > Please can you tell me if it is possible to run the binary bedGraphToBigWig feeding in from STDIN? > > I would like to do something like; ./peaks_to_bedgraph.pl file | bedGraphToBigWig stdin dm3_sizes output.bigwig (I also make the assumption that sort command can write to STDOUT). > > Any help appreciated and sorry if I missed this option. > Kind regards, > > John. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
