Hello, The data you are looking for can be parsed from the *.gmap data files found here:
http://www.decode.com/addendum/ and these files can be converted to a bed4 file using this awk command: awk '$1 != "chr" {print $1 "\t" ($3-1) "\t" $3 "\t" $2 ":" $4;}' file.gmap > file.bed You can then load the bed4 into the browser as a custom track. You can read more about custom tracks and the bed file format here: http://genome.ucsc.edu/goldenPath/help/customTrack.html http://genome.ucsc.edu/goldenPath/help/customTrack.html#BED If you only want the snp <-> cM mapping you can extract the 2 relevant columns from the *.gmap data files. We hope to display this data in the browser at some point but are currently working on other projects. Best regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 3/21/11 10:39 AM, Michele Gornick wrote: > Is there a way to get the map position (cM) based on the SNP position (rs#)? > > For example: > dbSNP: rs8078753 > Position: chr17:60964712 > > I would like the physical map position in cM. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
