Good Morning Ravi: Your best option would probably be to download the blat binary and .2bit file for the genome you want to use and run your blat operations locally. http://genome-test.cse.ucsc.edu/~kent/exe/ http://genome.ucsc.edu/goldenPath/help/blatSpec.html http://hgdownload.cse.ucsc.edu/gbdb/hg19/
--Hiram ----- Original Message ----- From: "Ravi Subramanian" <[email protected]> To: [email protected] Sent: Friday, March 25, 2011 10:12:02 AM Subject: [Genome] Large BLAT queries Hello, My name is Ravi Subramanian, I am a postdoc at Tufts University, and I am trying to do a comparative genomics study, where I would need to do a batch BLAT search of upwards of 200-300 sequences at a time (each sequence is approximately 3 kb). Is there a way I can do this without the limitations of the standard BLAT interface? Thanks, Ravi -- Ravi Subramanian, Ph.D. Postdoctoral Associate Tufts University 136 Harrison Ave. Boston, MA 02140 _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
