Hi Hani, You can do this using the Table Browser. From the main page, click on "Tables" in the blue navigation bar. After selecting a clade, genome, and assembly of your choice, set the following:
group: Genes and Gene Prediction Tracks track: UCSC Genes table: knownGene region: genomic filter: Make a filter by clicking "create" next to filter. For cdsStart, select "!=" from the pull down menu and type "cdsEnd" into the text box. Click "submit". This will filter out non-coding genes. output format: sequence output file: if you would rather have the results saved to a file instead of displaying in the browser window, enter the name you would like the output file to have, otherwise, leave blank Click "get output". On the next page, select "genomic" then click "submit". Select the appropriate options on the following page, then click "get sequence". For more information on how to use the Table Browser, please see: http://genome.ucsc.edu/cgi-bin/hgTables#Help If you have any further questions, please contact us again at [email protected]. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group Hani Choudhry wrote: > Dear UCSC, > I am wondering how can I download list of all protein coding genes (chro > location, sequence, name)?! I don’t want any non coding RNA in list.. > Thanks for you in advance and look forward to your reply. > Regards, > Hani Choudhry > > .......................................................................... > > Hani Choudhry, > > Genomic Research Lab > > Wellcome Trust Centre of Human Genetics > > Nuffield Dept of Clinical Medicine > > University of Oxford > > Oxford- UK > > Lab tel: +44-1865287519 > > Mobile: +44-7771219664 > > Email: [email protected]<mailto:[email protected]> > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
