I need a mapping between Ensembl transcript ID and Refseq transcript ID (from refflat.txt file). I am trying to use the UCSC table browser to generate such a tab delimited output - however, I am unable to do so. I get N/A for refseq transcript ID column values.
#mm9.ensGtp.gene mm9.ensGtp.transcript mm9.ensGene.name mm9.ensGene.chrom mm9.refFlat.geneName mm9.refFlat.name ENSMUSG00000090025 ENSMUST00000160944 ENSMUST00000160944 chr1 n/a n/a ENSMUSG00000064842 ENSMUST00000082908 ENSMUST00000082908 chr1 n/a n/a ENSMUSG00000051951 ENSMUST00000162897 ENSMUST00000162897 chr1 n/a n/a ENSMUSG00000051951 ENSMUST00000159265 ENSMUST00000159265 chr1 n/a n/a ENSMUSG00000051951 ENSMUST00000070533 ENSMUST00000070533 chr1 n/a n/a Please help in generating this mapping as I need to integrate transcript IDs from Ensembl with refseq. Thank you! HARSHA K RAJASIMHA, Ph.D. Digicon Contractor, ITMB/NNRL/NEI Bioinformatics Programmer / Analyst National Institutes of Health 6 CENTER DR RM 303 MSC 0610 BETHESDA MD 20892-0610 Tel: 301-402-5734 Fax: 301-480-1769 Email: [email protected] _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
