Hi Janeela, To figure out where in the exon the protein is translated from, you will need to use the table browser. To get to the table browser click on on "Tables" from the blue navigation bar.
Set the clade, genome, and assembly. Then you will need to set the following: group: Gene and Gene prediction tracks track: UCSC Genes table: knownGene region: genome identifiers (names/accessions): click on "paste list" and paste in the identifiers following the instructions. output format: selected fields from primary and related tables click "get output" select the fields you want displayed. click "get output" Hope this helps lead you in the right direction. If you have further questions, please contact us at [email protected] Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ----- Original Message ----- From: "janeela khan" <[email protected]> To: "UCSC genome" <[email protected]> Sent: Thursday, March 31, 2011 8:21:24 AM Subject: [Genome] help: Exonic position map to Protein position Dear All, Could you guide me how I can map certain Positions in an exon to the Protein positions? Here i donot have the exact genomic positions but I have the gene name and the relative position in an exon. Is there a way to map this position to protein? Thanks for the help in advance MvH/janeela _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
