Hi Ray, These files can be found on the Downloads page. From the UCSC main page, click on 'Downloads' located in the left-side menu. On the following page, click on 'Mouse', which will take you to the 'Mouse Genome' section. From there, click on 'LiftOver Files'. This will take you to http://hgdownload.cse.ucsc.edu/goldenPath/mm9/liftOver/, where you can download this file: mm9ToMm8.over.chain.gz. The mm8 to mm9 file (mm8ToMm9.over.chain.gz) is located here: http://hgdownload.cse.ucsc.edu/goldenPath/mm8/liftOver/.
Please feel free to contact us again at [email protected] if you have further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group Ray Ho wrote: > Hi, > > I am a research assistant working in Children's Hospital Boston. > While I was trying to download the data files required as input to the > liftOver utility, I cannot find the data I need. > Can you please generate the data files for assembly mm9 to mm8 (and also mm8 > to mm9)? > Thank you so much. > > > Best, > > Ray > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
