Hi Thomas, you can try the suggestions from here: http://biostar.stackexchange.com/questions/6107/anyone-know-a-general-variant-snp-indel-effect-predictor-annotator <http://biostar.stackexchange.com/questions/6107/anyone-know-a-general-variant-snp-indel-effect-predictor-annotator>or here http://biostar.stackexchange.com/questions/5495/predicted-impact-of-indels or here http://biostar.stackexchange.com/questions/2155/how-to-check-if-the-iupac-snp-code-changes-translation
good luck! cheers Max On Tue, Apr 12, 2011 at 5:09 PM, Thomas Juettemann <[email protected]>wrote: > Hi all, > > I was wondering if anyone knows a program (web-service or stand alone) > that returns if a given sequence variation has an effect on the gene > product (e.g. frameshift, introduction of a stop codon). > Ideally I'd like to submit a list of variations (in BED format), the > reference genome (hg18/19) and get type of effect back. > > Thanks, > Thomas > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
