Hi Xuanzhu, The column you are referring to (ACGACA/GTGAC), are sequences of observed alleles from the rs_fasta files downloaded from NCBI. You can view more information about this table and column descriptions using the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables. Make the following selections:
clade: Mammal genome: Human assembly: Mar. 2006 (NCBI36/hg18) group: Variation and Repeats track: SNPs (130) table: snp130 Click on "describe table schema". I hope this helps. Please contact us at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group ----- Original Message ----- From: "刘轩竹" <[email protected]> To: [email protected] Sent: Wednesday, April 13, 2011 4:44:39 AM Subject: [Genome] The question of snp130.txt.gz (hgdownload.cse.ucsc.edu/goldenPath/hg18/database/snp130.txt.gz) How to understand column 10: 585 chr1 11209 11215 rs71309401 0 - TGTCGT TGTCGT ACGACA/GTGAC genomic deletion unknown 0 0 unknown range 3 -- Best wishes, Xuanzhu Liu BGI-Shenzhen _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
