Hi Mary, Thank you, but what I really want is axt files. Could you also upload them or tell me how to convert the net file to axt files?
Best, Daisuke Komura ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ Daisuke Komura Department of Pathology, Graduate School of Medicine, The University of Tokyo. 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033 Japan mailto: [email protected] ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2011/4/14 Mary Goldman <[email protected]>: > Hi Daisuke, > > Thank you for your patience. We have now uploaded the net file to here: > http://hgdownload.cse.ucsc.edu/goldenPath/hg19/vsSelf/hg19.hg19.net.gz. > > If you have any other comments or questions, please feel free to contact the > mailing list again ([email protected]). > > Best, > Mary > --------------------- > Mary Goldman > UCSC Bioinformatics Group > > On 4/5/11 2:33 PM, Daisuke Komura wrote: >> >> Dear Luvina, >> >> Could you please also upload best-chain alignments in axt format for >> hg19 like hg18? >> Those for hg18 is found in the following URL. >> http://hgdownload.cse.ucsc.edu/goldenPath/hg18/vsSelf/axtNet/ >> >> Thank you in advance, >> Daisuke >> ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ >> Daisuke Komura >> Department of Pathology, Graduate School of Medicine, The University of >> Tokyo. >> 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033 Japan >> mailto: [email protected] >> ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ >> >>> 2011/3/2 Luvina Guruvadoo<[email protected]>: >>>> >>>> Hi Daisuke, >>>> >>>> Our apologies, Human self alignments for hg19 was missing from the >>>> downloads >>>> page. The download file has been added and can be found here: >>>> http://hgdownload.cse.ucsc.edu/goldenPath/hg19/vsSelf/. >>>> >>>> Regards, >>>> Luvina >>>> >>>> --- >>>> Luvina Guruvadoo >>>> UCSC Genome Bioinformatics Group >>>> >>>> >>>> Daisuke Komura wrote: >>>>> >>>>> Hello, >>>>> >>>>> Can anyone tell me if it is possible to download Human self alignments >>>>> for hg19? >>>>> I found that for hg18 in >>>>> http://hgdownload.cse.ucsc.edu/goldenPath/hg18/vsSelf/ but can't find >>>>> that for hg19. >>>>> Thank you. >>>>> >>>>> Daisuke Komura >>>>> mailto: [email protected] >>>>> _______________________________________________ >>>>> Genome maillist - [email protected] >>>>> https://lists.soe.ucsc.edu/mailman/listinfo/genome >>>>> >>>> >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
