Hi Liu, This can be done using the Table Browser. From the main page, click on "Tables" in the top blue navigation bar. After selecting a clade, genome, and assembly of your choice, make the following selections:
group: Genes and Gene Prediction Tracks track: UCSC Genes table: knownGene region: genome (you may select a smaller region using the position box) identifiers (names/accessions): (you may paste or upload a list of identifiers you are interested in) output format: selected fields from primary related tables Click "get output". From here, select "proteinID". Then under ".kgXref fields" select "spID". Scroll up and click "get output". More information on how to use the Table Browser can be found here: http://genome.ucsc.edu/cgi-bin/hgTables#Help Please contact us again at [email protected] if you have further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group Liu, Chenglin wrote: > Hi, > > Is there anywhere let me map the ucsc protein id to the Refseq protein id > NP_** directly. I can't find it. > > Thanks. > > Liu > > Methodist. Leading Medicine. Recognized by U.S.News & World Report as one of > America's "Best Hospitals" in 13 specialties. Named to FORTUNE magazine's > "100 Best Companies to Work For" list five years in a row Designated as a > Magnet hospital for excellence in nursing Visit us at methodisthealth.com > Follow us at twitter.com/MethodistHosp and > www.facebook.com/MethodistHospital ***CONFIDENTIALITY NOTICE*** This e-mail > is the property of The Methodist Hospital and/or its relevant affiliates and > may contain restricted and privileged material for the sole use of the > intended recipient(s). Any review, use, distribution or disclosure by others > is strictly prohibited. If you are not the intended recipient (or authorized > to receive for the recipient), please contact the sender and delete all > copies of the message. Thank you. > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
