Hello Shirou, I will paste parts of your question below to answer them:
> T28F2.t1 is not annotated to tRNA but a predicted protein. The link to the predicted protein has been removed from the ce4 WormBase RNA track. This presence of this link was a bug. Sorry for the confusion! > On the other hand, for the human database in UCSC, tRNA appeared in > repeat masker tracks. You are correct: there is a "tRNA Genes" track on the human (GRCh37/hg19) browser. However, not all data is available for all species. The worm browsers do not have a separate "tRNA Genes" track. I hope this helps explain what you are seeing. If you still have questions, please feel free to reply to [email protected]. -- Brooke Rhead UCSC Genome Bioinformatics Group On 04/12/11 19:08, gpyamashiro山田思郎 wrote: > Dear UCSC Webmaster > > I always use your database.I am interested in tRNA position in genome. > > I can not find tRNA information in your C.elegans database. > for exampl, below is the choromosomal position of Met-tRNA, in tRNA > database. > http://gtrnadb.ucsc.edu/Celeg/ > > chrI > 3638926 3638854 > View<http://genome.ucsc.edu/cgi-bin/hgTracks?db=ce4&position=chrI:3638704-3639076> > Met > > In WormBase RNA track, it appeared as follows at the position of tRNA : > ------------------------------------------------ > *Outside Link: > *T28F2.t1<http://ws170.wormbase.org/db/gene/gene?name=T28F2.t1;class=Gene> > *Position:* > chrI:3638854-3638926<http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=191662743&db=ce4&position=chrI%3A3638854-3638926> > *Genomic Size:* 73 > *Strand:* - > Links to sequence: > > - Translated > Protein<http://genome.ucsc.edu/cgi-bin/hgc?hgsid=191662743&g=htcTranslatedPredMRna&i=T28F2.t1&c=chrI&l=3638534&r=3639244&o=translate&table=sangerRnaGene>from > predicted mRNA > - Predicted > mRNA<http://genome.ucsc.edu/cgi-bin/hgc?hgsid=191662743&g=htcGeneMrna&i=T28F2.t1&c=chrI&l=3638534&r=3639244&o=sangerRnaGene&table=sangerRnaGene>from > genomic sequences > - Genomic > Sequence<http://genome.ucsc.edu/cgi-bin/hgc?hgsid=191662743&g=htcGeneInGenome&i=T28F2.t1&c=chrI&l=3638534&r=3639244&o=sangerRnaGene&table=sangerRnaGene>from > assembly > > --------------------------------------------------------------------------------- > > T28F2.t1 is not annotated to tRNA but a predicted protein. > > On the other hand, for the human database in UCSC, tRNA appeared in repeat > masker tracks. > There is something different between these two databases > > Sincerely yours > > Shirou Yamada > Gunma University, JAPAN > [email protected] > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
