Hi Asaf, We don't have any direct annotations on spice junction reliability. You would probably need to compare multiple data sources and then make your own decisions on reliability.
Sorry we couldn't be of more help on this one. If you have any additional questions, please contact us again at: [email protected] - Greg On 4/11/11 1:45 AM, Asaf Levy wrote: > Still in the same subject - > where can I find data about the reliability of the splice junctions in the > alignment? > > Thanks > Asaf > > On Mon, Apr 11, 2011 at 11:36 AM, Asaf Levy<[email protected]> wrote: > >> Hi, >> I am using the all_mrna and intronEst tables of several species. I know >> that these tables contain some info about the number of insertions and how >> many bp are involved in insertions. However, where can I find the location >> of an insertion in the alignment? (the data which is presented in the >> browser by double horizontal lines or vertical colored lines). >> >> >> Regards, >> Asaf >> >> >> -- >> Asaf Levy, PhD student >> Rotem Sorek Lab >> Weizmann Institute of Science >> Rehovot 76100, Israel >> Tel: +972-8-9346344 >> Cell: +972-54-7290026 >> [email protected] >> [email protected] >> > > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
