Hi Andrea, RepeatMasker should be able to answer your questions - please contact them here: http://www.repeatmasker.org/. More information about how our track was generated can be found on the track details page: http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=mm9&g=rmsk. Please feel free to contact the mail list again if you require further assistance.
Best, Mary ------------------ Mary Goldman UCSC Bioinformatics Group On 5/3/11 1:48 PM, Andrea Schorn wrote: > Hi, > I find several genomic loci that have two Repeatmasker annotations: > e.g. (mm9) chr2:146,868,722-146,868,898 contains an annotation for a SINE > element but also an LTR element. How comes that two different transposon > classes overlap here and were assigned to this locus? Did the Repbase > consensus sequences not allow an unambiguous assignment at these loci when > the repeatmask was built? > Thanks, > Andrea > > > > > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
