Dear Hiram, Thanks for your response. I checked my server of sql account and found the following folders.
tninja@junlab-webserver:/home/mysql/mysql$ ls debian-5.1.flag hgcentral phpmyadmin sacCer2 dm3 hgFixed proteins040315 sp040315 gbrowse_pombe ibdata1 proteins050415 sp050415 gbrowse_rat ib_logfile0 proteins051015 sp051015 gbrowse_tair8 ib_logfile1 proteins060115 sp060115 gnomex junlab-webserver.pid proteins070202 sp070202 go080130 mm9 proteins080707 sp080707 hg18 mysql proteins090821 sp090821 hg19 mysql_upgrade_info rn4 widgets ------ tninja@junlab-webserver:/home/mysql$ cd mysql tninja@junlab-webserver:/home/mysql/mysql$ls columns_priv.frm help_relation.MYI slow_log.CSV columns_priv.MYD help_topic.frm slow_log.frm columns_priv.MYI help_topic.MYD tables_priv.frm db.frm help_topic.MYI tables_priv.MYD db.MYD host.frm tables_priv.MYI db.MYI host.MYD time_zone.frm event.frm host.MYI time_zone_leap_second.frm event.MYD ndb_binlog_index.frm time_zone_leap_second.MYD event.MYI ndb_binlog_index.MYD time_zone_leap_second.MYI func.frm ndb_binlog_index.MYI time_zone.MYD func.MYD plugin.frm time_zone.MYI func.MYI plugin.MYD time_zone_name.frm general_log.CSM plugin.MYI time_zone_name.MYD general_log.CSV proc.frm time_zone_name.MYI general_log.frm proc.MYD time_zone_transition.frm help_category.frm proc.MYI time_zone_transition.MYD help_category.MYD procs_priv.frm time_zone_transition.MYI help_category.MYI procs_priv.MYD time_zone_transition_type.frm help_keyword.frm procs_priv.MYI time_zone_transition_type.MYD help_keyword.MYD servers.frm time_zone_transition_type.MYI help_keyword.MYI servers.MYD user.frm help_relation.frm servers.MYI user.MYD help_relation.MYD slow_log.CSM user.MYI Could you please let me know where I can create a folder called "visiGene"? /home/mysql$ or /home/mysql/mysql$ and I didn't find a folder called "data" It means I will create a new fodler "/data/visiGene", is it right? Then I will copy your files as rsync -a -P rsync://hgdownload.cse.ucsc.edu/mysql/visiGene/ /home/mysql/data/visiGene/ Looking forward to hearing from you. Best Wishes, Yan ________________________________________ From: Hiram Clawson [[email protected]] Sent: Wednesday, May 04, 2011 2:01 PM To: Luo, Yan (NIH/NHLBI) [C] Cc: [email protected] Subject: Re: [Genome] Fail to use "visiGene" Good Morning Yan: We have failed to mention visiGene in the browser setup procedures. It is a small database that you can install in your local situation. The database can be fetched via rsync directly into your MySQL installation: rsync -a -P rsync://hgdownload.cse.ucsc.edu/mysql/visiGene/ /your/mysql/data/visiGene/ --Hiram Luo, Yan (NIH/NHLBI) [C] wrote: > Hi, Mary, > > The issue has been fixed by edit the index file, however, we have a new > error, I believe it is related with the connection of DB. When I click > "visiGene" (top bar or left bar), I got the following error"Early Error", > could you please let me know how to fix it? > > Couldn't connect to database visiGene on localhost as hguser. Unknown > database 'visiGene' > > Looking forward to hearing from you. > > Best Wishes, > > Yan _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
