Hi, I was looking at the description of the chain files at: http://genome.ucsc.edu/goldenPath/help/chain.html and have some questions:
1. What does the chain score represent? How is it computed? 2. The alignment data lines contain the size of the ungapped alignment. How many mismatches are allowed in each ungapped alignment? 3. What tool is used to do the alignments? Thanks a lot for your help! -Dhiral. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
