Hi Sophia, The problem was in the all_est table. Both the all_est and estOrientInfo tables should have 1058626 unique accession numbers now.
The tables are available now via the Table Browser (http://genome.ucsc.edu/cgi-bin/hgTables), but the files on our downloads server, here: http://hgdownload.cse.ucsc.edu/goldenPath/rn4/database/ are not normally updated until the weekend. Let us know if you need the downloads right away, and we can make the files available sooner. -- Brooke Rhead UCSC Genome Bioinformatics Group On 05/05/11 17:25, Brooke Rhead wrote: > Hi Sohpia, > > We see the problem with the all_est.txt file, and we are working on > fixing it. I'll let you know when it is ready to download again. Thank > you for pointing this problem out to us! > > -- > Brooke Rhead > UCSC Genome Bioinformatics Group > > > On 05/04/11 12:19, Zarakhovich, Sophia wrote: >> I found a discrepancy in all_est.txt and estOrientInfo.txt files. It >> seems that estOrientInfo.txt is missing entries for 521 of all_est.txt >> entries. Since attachments get stripped, I copied and pasted below a >> sample of accession numbers from all_est.txt that don't have >> corresponding entries in the estOrientInfo.txt file. >> >> (there are 1059147 unique accession numbers in all_est.txt file and only >> 1058626 unique accesion numbers in estOrientInfo.txt). Below are first >> 20: >> >> AA685085 >> AA685926 >> AA800900 >> AA818533 >> AA848711 >> AA848781 >> AA850084 >> AA851042 >> AA851277 >> AA851937 >> AA858768 >> AA892566 >> AA894005 >> AA899817 >> AA901250 >> AA925352 >> AA926136 >> AA942877 >> AA945459 >> AA946083 >> >> When I previously downloaded these files, on March 18th this year, the >> number of unique accessions between two files was exactly the same, >> 1059185. >> >> Thank you for your prompt attention! I hope this will be resolved just >> as quickly as the previous issue. >> >> Best regards, >> >> Sophia Zarakhovich >> >> Notice: This e-mail message, together with any attachments, contains >> information of Merck & Co., Inc. (One Merck Drive, Whitehouse Station, >> New Jersey, USA 08889), and/or its affiliates Direct contact information >> for affiliates is available at >> http://www.merck.com/contact/contacts.html) that may be confidential, >> proprietary copyrighted and/or legally privileged. It is intended solely >> for the use of the individual or entity named on this message. If you are >> not the intended recipient, and have received this message in error, >> please notify us immediately by reply e-mail and then delete it from >> your system. >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
