I am trying to do a liftover for Human data from NCBI36/hg18 to GRCh37/ hg19
If my input is in position format: chr12:541583-541583 the web-based Liftover tool happily converts it to: chr12:671322-671322 But if my input is in BED format: chr12 541583 541583 Liftover fails with this output: #Deleted in new chr12 541583 541583 Why this work when the input is in 'position' format but fails when the same information is in 'BED' format? This is mystifying to me, as BED-format data from the example BED file like this: chr7 127471196 127472363 is happily converted by the liftover tool. Thank you, -- Dan -- _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
