Here is convenient table where all the coverage and N50 numbers have been collected together in one place for a rough gauge of assembly quality:
http://genomewiki.ucsc.edu/index.php/Hg19_Genome_size_statistics Take into considerationg the caveats that Brian has previously mentioned. --Hiram > On Wed, May 18, 2011 at 11:19 AM, Karen Lawrence <[email protected]> wrote: >> Is there a quantitative measure for how complete a given genome assembly >> is? With increasing distance from human, there are some unaligned or >> unannotated regions, for instance, in lizard or chicken. This number would >> be helpful to me, as I am doing many cross-species comparisons and >> 'LiftOvers' of datasets generated in the mouse but then being Lifted to >> other more distant vertebrates. >> Thanks for your help. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
