Hello I need to find a way to extract the phyloP conservation data for specific areas of the chromosome. I have over 3000 specific areas that I need to look at and extract the phyloP values for them. I thought that I could just download the mass data file but it seems like the file does not take into account gaps or areas on the chromosome where the phyloP data is not given.
For example if I wanted the following phyloP for the query : chr1:1220332130-1220332150 On the large phyloP file the data for chr1, it starts at 10918. If there are any gaps between 10918 and 1220332130, then the index to the nucleotide number will be thrown off. Is there any way to compensate for gaps? Or is there a better way to extract phyloP data? Thanks in advance Dave _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
