Hi, These are the personal genome variants links on UCSC. Does anyone has the knowledge from which aligner/variant caller these were called?
*hg19:* http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/pgNA12878.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/pgNA12891.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/pgNA12892.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/pgNA19240.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/pgSjk.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/pgVenter.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/pgWatson.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/pgYh1.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/pgYoruban3.txt.gz *hg18:* http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/pgNA12878.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/pgNA12891.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/pgNA12892.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/pgNA19240.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/pgSjk.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/pgVenter.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/pgWatson.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/pgYh1.txt.gz http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/pgYoruban3.txt.gz Also, NA12891, NA12892, NA19240, Sjk, Watson and Venter have same files for hg19 and hg18 Thanks and regards, Randeep _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
