Good Morning: You can fetch these positions from the "gap" track via the table browser at the http://genome.ucsc.edu/cgi-bin/hgTables?db=mm9
By definition, these areas are gaps, the repetitive sequence has not been determined. Or, you can fetch them directly from the public MySQL server with the mysql commands: $ mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -N -e "show tables;" mm9 \ | grep _gap | \ while read T; do mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -N -e "select * from $T" mm9; done \ | sort -k8 | cut -f2- | head -24 chr1 0 3000000 1 N 3000000 centromere no chr10 0 3000000 1 N 3000000 centromere no chr11 0 3000000 1 N 3000000 centromere no chr12 0 3000000 1 N 3000000 centromere no chr13 0 3000000 1 N 3000000 centromere no chr14 0 3000000 1 N 3000000 centromere no chr15 0 3000000 1 N 3000000 centromere no chr16 0 3000000 1 N 3000000 centromere no chr17 0 3000000 1 N 3000000 centromere no chr18 0 3000000 1 N 3000000 centromere no chr19 0 3000000 1 N 3000000 centromere no chr2 0 3000000 1 N 3000000 centromere no chr3 0 3000000 1 N 3000000 centromere no chr4 0 3000000 1 N 3000000 centromere no chr5 0 3000000 1 N 3000000 centromere no chr6 0 3000000 1 N 3000000 centromere no chr7 0 3000000 1 N 3000000 centromere no chr8 0 3000000 1 N 3000000 centromere no chr9 0 3000000 1 N 3000000 centromere no chrX 0 3000000 1 N 3000000 centromere no chrY 2902555 5902555 29 N 3000000 centromere no All of the mouse chromosomes except chrY are acrocentric: http://en.wikipedia.org/wiki/Acrocentric#Acrocentric --Hiram Yue Hu wrote: > Hi Everyone, > > Do anyone know how to where to find the position of genome locus position > of centromere region of mouse, and if possible, its sequence? > > Thanks a lot for your help > > Yue Hu _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
