Hi Mohsen, You can use the Batch Coordinate Conversion (liftOver) utility to extract these coordinates. Please see this previously answered mailing list question for more information: https://lists.soe.ucsc.edu/pipermail/genome/2011-May/025891.html.
Feel free to contact us again at [email protected] if you have additional questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group ----- Original Message ----- From: "Mohsen Sabouri" <[email protected]> To: [email protected] Sent: Friday, May 20, 2011 3:50:47 PM Subject: [Genome] finding conserved positions on a different species genome Hi, I am having trouble with table browser. I have a list of positions on the Human genome, hg19, in BED format. I want to extract the corresponding conserved positions (ChrN Start End) on the Mouse genome (mm9) that are 100 % match to my BED list into file. I can upload my BED file as custom track to Genome browser with no trouble. I just need help in extracting and saving the matching conserved coordinates on the Mouse genome into a file. I'd appreciate your help. Best Regards, Mohsen Sabouri _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
