Greetings, I am trying to programmatically assemble exons using the data obtained from the USCS website (ensGene.txt.gz, ccdsGene.txt.gz, etc.) to from the resulting amino acid sequence.
I understand that some records are incomplete (ie, cdsStartStat isn't cmpl) so that the list of nucleotide sequence obtained isn't a multiple of 3. Is there any way to generate the protein from these records using exonFrames, or other methods? And if so, how should I go about doing it? Thank you in advance. Regards, Sim Ngak Leng Bioinformatics Specialist Genome Institute of Singapore _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
