Hi, I wonder about allele frequency for SNPs. For example rs3216792 (a deletion SNP). Observed alleles are -/G and reference is G. But allele frequencies reported are G:6.529%; -:75.258%; and +:18.213%. What does + means in this case? G is as the reference, - a deletion and +? An extra G? A would appreciate if you can clarify this point. Kind regards
Teresita Ståhl _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
