Hi Omer, Ensembl has not produced a gene set for panTro3 (only panTro2: http://uswest.ensembl.org/Pan_troglodytes/Info/Index/). You will need to contact them with any questions about when/if one might be available. Were you having troubles using the Ensembl track on panTro2? If so, please describe the issue you are having in as much detail as possible.
Regarding the liftOver. I just checked and liftOver between panTro3 <-> panTro2 is working fine (http://genome.ucsc.edu/cgi-bin/hgLiftOver). Can you please let us know what the exact problem you're having is? - Greg Roe UCSC Genome Bioinformatics Group On 5/30/11 5:06 AM, Omer Gokcumen wrote: > Dear Sir/Madam, > > We are working on primate genomes and heavily using UCSC Genome browser. > However, we are having difficulties lifting over between panTro2 and panTro3 > genomic coordinates. In addition, we are not able to use the Ensembl track > for annotating the genes on that genome. Is it possible for you to inform us > regarding the dates that you are planning to implement these > functions/tracks? Alternatively, it would be great if you can let us know if > we are missing something regarding these issues. > > Thanks a lot in advance for your help. > > All the best, > Omer > > > > > ---------------------- > Omer Gokcumen, Ph.D. > Team Leader - Population Genetics and Evolution > Molecular Genetic Research Unit > Brigham&Women's Hospital | Harvard Medical School > 221 Longwood Avenue, EBRC-404 > Boston, MA 02115 > T: 617.732.5316 | F: 617.264.5176 > www.gokcumen.wordpress.com > [email protected] > [email protected] > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
