I had a poke round and noticed this
ftp://hgdownload.cse.ucsc.edu/goldenPath/currentGenomes/Homo_sapiens/database/knownBlastTab.txt.gz is it a human to all species ortholog file or is that too easy:-) -- Michael On Wed, 8 Jun 2011, Mary Goldman wrote: > Hi Michael, > > I believe you are asking about our multiz alignments here: > http://hgdownload.cse.ucsc.edu/goldenPath/hg19/multiz46way/. Note that this > is the alignment of other species' entire assemblies to human (hg19), not > just a list of genes and their orthologs. > > I hope this information is helpful. Please feel free to contact the mail > list again if you require further assistance. > > Best, > Mary > ------------------ > Mary Goldman > UCSC Bioinformatics Group > > On 6/7/11 4:41 AM, Michael Lush wrote: >> >> I currently download orthology assertionf between human and >> C. elegans, drosophila, mouse, rat, S. cerevisiae and zebrafish >> from ftp://hgdownload.cse.ucsc.edu/goldenPath/currentGenomes >> for our HCOP service (www.genenames.org/hcop) >> >> I understand that there are orthology assertions from human to other >> species in your database I'm currently looking at adding new species to >> the search (and adding extra support to existing ones) and I was wondering >> how to access this data. >> >> -- >> Michael >> >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> Michael John Lush PhD Tel:44-1223 492626 >> Bioinformatician >> HUGO Gene Nomenclature Committee Email: [email protected] >> European Bioinformatics Institute >> Hinxton, Cambridge >> URL: http://www.genenames.org >> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> _______________________________________________ >> Genome maillist - [email protected] >> https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
