Hi Carsten, Yes you can download this info with the Table Browser(http://genome.ucsc.edu/cgi-bin/hgTables). Select: -Your assembly (mm9?) -group: Expression and Regulation -track: GNF Atlas 2 -table: gnfAtlas2 (Note: the "describe table schema" is often helpful) -region: genome or position of interest -output format: all fields -output file: (give your file a name, if you want to download the data) -"get output"
For the tissue information, again at the Table Browser, select the same as the above, except for output format select: Microarray Names. You'll get a list of expIds/tissue types. To match with the score/expression data retrieved above. I hope that helps. Let us know if you have any additional questions: [email protected] - Greg Roe UCSC Genome Bioinformatics Group On 6/1/11 3:56 AM, Carsten Raabe wrote: > Dear Madame, dear Sir, > > I would be interested to search the expression data (GNF Expression > Atlas 2 Data from GNF1M Mouse Chip) that is made available in the on > server . Is there any chance to download a simple text file or any file > that could be searched in a computational way that would hold the > information of relative mRNA expression value and in particular the > information in which corresponding tissue the mRNA is detected. > > Thanks a lot in advance, > > > Carsten > > > Carsten Raabe > > Institute of experimental Pathology > von Esmarchstr 56 > > D-48149 Münster, Germany > > 049-(+)251-8358615 > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
