Dear Sirs, were can I find the parameters used to generate the RepeatMasker track? The problem is as it follows: I need to take from the horse genome a certain repetitive element, and I'm supposed to classify all the hits found according to their identity (with respect to the consensus sequence). Some collegues of mine already took all the sequences with at least 98% of identity by BLAST search, so, now I'm supposed to find those which have a lower identity, but I can't find out how to set up the Table Browser so that it finds the elements with the identity that I chose. How do I set up the table browser so, for exemple, it recovers only the elements with at least 90% of identity with the consensus sequence?
Thank you, Marco Santagostino -- Marco Santagostino, PhD Lab. Molecular and Cellular Biology Dept. Genetics and Microbiology, University of Pavia Ferrata street, 1 - 27100 Pavia, Italy Tel.: +39 0382 985540 Fax: +39 0382 528496 e-mail: [email protected] _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
