I am having trouble relating the content of the knownGene table to what is shown for GenBank. This is all based on the hg19 build. As an example, searching for the genbank ID AF410783 maps to one form of TIRAP in knownGene. The most 3' region of this gene is displayed in the browser around 126,165,000, but the form with the same ID in the Human mRNAs section has a region that extends out to >125,167,000. What is the cause of this apparent discrepancy? Also, what is the determining factor behind inclusion of a GenBank sequence in knownGene?
Thanks, Joel _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
