Hi Shouyong, Are you confused as to why there are 3 OR4F16 entries? The track description page helps to explain more about the data:
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&c=chr1&g=refGene The OR4F16 gene has undergone provisional (medium) review. It is possible that this RNA aligned in multiple places. If you have further questions, please contact the mailing list: [email protected]. Vanessa Kirkup Swing UCSC Genome Bioinformatics Group ---------- Forwarded message ---------- From: Shouyong Peng <[email protected]> Date: Thu, Jun 16, 2011 at 8:50 AM Subject: [Genome] on hg18_refGene.txt.gz To: [email protected] Hello, I download refGene data, and found there must be some wrong/confusing annotations there. wget http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/refGene.txt.gz-O hg18_refGene.txt.gz zcat hg18_refGene.txt.gz | grep OR4F16 587 NM_001005277 chr1 + 357521 358460 357521 358460 1 357521, 358460, 0 OR4F16 cmpl cmpl 0, 589 NM_001005277 chr1 - 610958 611897 610958 611897 1 610958, 611897, 0 OR4F16 cmpl cmpl 0, 1963 NM_001005277 chr5 + 180726893 180727832 180726893 180727832 1 180726893, 180727832, 0 OR4F16 cmpl cmpl 0, Shouyong _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
