Dear Pauline,
Below is the response I received from Dr. Eddy. Could you please
suggest any alternatives to get RNA genes track for hg19?
Thank you very much.
Best Regards,
Nirmala
------------------------------------------------------------------------------------
Nirmala Akula, MS, PhD
Contractor,
Human Genetics Branch
NIMH/NIH
Blg 35, Rm 1A/205
Bethesda, MD - 20892
Phone# 301-451-4258
-----Original Message-----
From: Eddy, Sean [mailto:[email protected]]
Sent: Friday, June 17, 2011 12:56 PM
To: Akula, Nirmala (NIH/NIMH) [C]
Subject: Re: [Genome] hg19 - RNA genes
I'm sorry, UCSC is mistaken. We did not produce annotation for hg19. Our
annotation of hg16, the last assembly we annotated (Mar 2004), is here:
ftp://selab.janelia.org/pub/annotation/human-hg16
Sean
-----
Sean Eddy | HHMI Janelia Farm Research Campus | http://selab.janelia.org/
On Jun 17, 2011, at 12:35 PM, Akula, Nirmala (NIH/NIMH) [C] wrote:
> Dear Dr. Eddy,
>
> I wanted to download RNA genes (hg19) data from UCSC genome browser,
> but it was unavailable. I e-mailed UCSC bioinformatics team and they asked me
> to contact you. Could you please let me know when RNA genes track will be
> available for hg19 build?
>
> Thank you very much.
>
> Best Regards,
> Nirmala
>
> ------------------------------------------------------------------------------------
> Nirmala Akula, MS, PhD
> Contractor,
> Human Genetics Branch
> NIMH/NIH
> Blg 35, Rm 1A/205
> Bethesda, MD - 20892
> Phone# 301-451-4258
>
> -----Original Message-----
> From: Pauline Fujita [mailto:[email protected]]
> Sent: Thursday, June 16, 2011 3:29 PM
> To: Akula, Nirmala (NIH/NIMH) [C]
> Cc: '[email protected]'
> Subject: Re: [Genome] hg19 - RNA genes
>
> Hello Nirmala,
>
> If you are interested in seeing a version of this track for hg19 you
> should contact Sean Eddy at Washington University, the original source
> for the data behind this track.
>
> You can read more about this track on its associated description page:
>
> http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg18&c=chrX&g=rnaGene
>
> Best regards,
>
> Pauline Fujita
> UCSC Genome Bioinformatics Group
> http://genome.ucsc.edu
>
>
> On 06/15/11 14:14, Akula, Nirmala (NIH/NIMH) [C] wrote:
>> Hi,
>>
>> I would like to download Human RNA genes in hg19 assembly. Could
>> you please let me know when track is going to be available?
>>
>> Thank you very much.
>>
>> Best Regards,
>> Nirmala
>>
>> ------------------------------------------------------------------------------------
>> Nirmala Akula, MS, PhD
>> Contractor,
>> Human Genetics Branch
>> NIMH/NIH
>> Blg 35, Rm 1A/205
>> Bethesda, MD - 20892
>> Phone# 301-451-4258
>>
>> _______________________________________________
>> Genome maillist - [email protected]
>> https://lists.soe.ucsc.edu/mailman/listinfo/genome
>
_______________________________________________
Genome maillist - [email protected]
https://lists.soe.ucsc.edu/mailman/listinfo/genome
