Hi Nipin, You may be getting this error because of line breaks in your input file. Please see http://genome.ucsc.edu/FAQ/FAQformat.html#format2 for more information. Try uploading the following:
browser position chr22:13073000-13074000 browser hide all track name=fishBlats description="Fish BLAT" visibility=2 useScore=1 59 9 0 0 1 823 1 96 +- FS_CONTIG_48080_1 1955 171 1062 chr22 47748585 13073589 13073753 2 48,20, 171,1042, 34674832,34674976, 59 7 0 0 1 55 1 55 +- FS_CONTIG_26780_1 2825 2456 2577 chr22 47748585 13073626 13073747 2 21,45, 2456,2532, 34674838,34674914, 59 7 0 0 1 55 1 55 -+ FS_CONTIG_26780_1 2825 2455 2676 chr22 47748585 13073727 13073848 2 45,21, 249,349, 13073727,13073827, This should work for you. Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group nipun kakkar wrote: > Hi > > I am trying to upload a psl file output on the custom track but get the > following error: > > * Error Unrecognized format line 1 of custom track: 59 9 0 0 1 823 1 96 +- > FS_CONTIG_48080_1 1955 171 1062 chr22 (note: chrom names are case sensitive > > *My input is: > > browser position chr22:13073000-13074000 > browser hide all > track name=fishBlats description="Fish BLAT" visibility=2 > useScore=1 > 59 9 0 0 1 823 1 96 +- FS_CONTIG_48080_1 1955 171 1062 chr22 > 47748585 13073589 13073753 2 48,20, 171,1042, 34674832,34674976, > 59 7 0 0 1 55 1 55 +- FS_CONTIG_26780_1 2825 2456 2577 chr22 > 47748585 13073626 13073747 2 21,45, 2456,2532, 34674838,34674914, > 59 7 0 0 1 55 1 55 -+ FS_CONTIG_26780_1 2825 2455 2676 chr22 > 47748585 13073727 13073848 2 45,21, 249,349, 13073727,13073827, > > > Can anyone point out why is the error ? > <[email protected]> > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
