Hi David, You can download this data as BED files using our Table Browser. However, if you are downloading more than just a small portion of this data, this would be an inefficient method. Also, for the Signal data, using the table browser results in the data being compressed with a minor loss in resolution.
Please see this previously answered mailing list question about extracting data from these types of tracks and help with hgWiggle: https://lists.soe.ucsc.edu/pipermail/genome/2010-December/024495.html This is the location of the data you will need for the directions: ftp://hgdownload.cse.ucsc.edu/goldenPath/mm8/database/ (the files called broadStemChip*) ftp://hgdownload.cse.ucsc.edu/gbdb/mm8/broadStemChip/ I hope this is helpful. Please contact the mail list ([email protected]) again if you have any further questions. Katrina Learned UCSC Genome Bioinformatics Group David Ries wrote, On 6/17/2011 7:13 AM: > Hello, > > I'm interested in working with the Broad H3 mm8 Data, as it can be viewed in > the UCSC browser. > Is it possible to get this data as wig or BED format? > I tried to extract it with hgwiggle out of the wib files, but it didn't work > for me. > > I realized, that the H3 tracks for human can easiely be downloaded, but for > mouse it's not the case. > > Any help would be much appreciated. > > Best regards, > > David > _______________________________________________ > Genome maillist [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
