Hi Wen, This is the expected format when using the Table Browser, please see this previously answered question for more information: https://lists.soe.ucsc.edu/pipermail/genome/2010-February/021361.html
You can download the GTF (for cow) directly from Ensembl here: ftp://ftp.ensembl.org/pub/release-62/gtf/bos_taurus/ Please contact us again at [email protected] if you have any further questions. --- Luvina Guruvadoo UCSC Genome Bioinformatics Group Wen Huang wrote: > Hi, > > I have a question on the GTF format output of the "ensGene" table of the > "ensembl genes" track. > > Typically, the 'gene_id' field should be something like "ENSG...". However, > what I have been getting for the 'gene_id' field is identical the > 'transcript_id' field. I looked at the table schema and found that the table > did contain a second name for each entry, which appeared to be the 'gene_id'. > I work on the cow genome but this problem also exists for the human genome. > > Would you be able to look into this problem and at present, is there a > work-around? > > Thank you for your help. > > Sincerely, > Wen Huang > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome > _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
