Good Morning Jun: The column 5 specification is most likely coming from the trackDb.ra file specification you made for this track. Please re-check your trackDb entries. Note the information about settings in
Please note, your bedGraph tracks can function much more efficiently if you convert them to bigWig tracks with the converter: bedGraphToBigWig The bigWig trackDb specifications can be found in the source tree information: src/hg/makeDb/trackDb/README http://genome-source.cse.ucsc.edu/gitweb/?p=kent.git;a=blob;f=src/hg/makeDb/trackDb/README See also: http://genomewiki.ucsc.edu/index.php/Selecting_a_graphing_track_data_format --Hiram ----- Original Message ----- From: "Jun Zhuang" <[email protected]> To: [email protected] Sent: Monday, June 27, 2011 9:19:12 AM Subject: [Genome] How to load a bedGraph formatted file Hi, I loaded a bedGraph formatted file at in-house ucsc browser server using: % hgLoadBed -bedGraph=4 species tablename data The data is format of 4 columns bedGraph, i.e. chr1 14670 14671 5 The browser gave me error message which I don't understand: bedGraphLoadItems: table myTable only has 4 data columns, specified graph column 5 does not exist Thanks for any suggestions, Jun Notice: This e-mail message, together with any attachments, contains information of Merck & Co., Inc. (One Merck Drive, Whitehouse Station, New Jersey, USA 08889), and/or its affiliates Direct contact information for affiliates is available at http://www.merck.com/contact/contacts.html) that may be confidential, proprietary copyrighted and/or legally privileged. It is intended solely for the use of the individual or entity named on this message. If you are not the intended recipient, and have received this message in error, please notify us immediately by reply e-mail and then delete it from your system. _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
