Hello Anamika, One of our developers had this to say about your question:
We get the data file hg18.beta.polyaDb.bed from the contributor directly and it would see that there is only positional data for polyA sites with the best score (1000). To obtain data for positions with lesser scores you will have to contact the contributor, Dr. Bin Tian: http://exon.umdnj.edu/lab_home/ You can also view polyA DB directly here: http://exon.umdnj.edu/polya_db/ Hopefully this information was helpful and answers your question. If you have further questions or require clarification feel free to contact the mailing list at [email protected]. Regards, Pauline Fujita UCSC Genome Bioinformatics Group http://genome.ucsc.edu On 06/22/11 09:34, Anamika KRISHANPAL wrote: > Hello, >>From the UCSC browser, I wanted to download the data of PolyA for hg19. I saw >>two options: > polyaDb and PolyApredict > As far as I understood the database "polyaDb" contains well curated polyA > sites having cDNA/EST evidences available unlike PolyApredict. > But if I see the score of the polyA signal in polyaDb, I find that it is > always 1000. Is there some problem? Or are only those co-ordinates submitted > to UCSC which have the highest polyA score? What about the genes having > medium and low score polyA signal? > Please guide me. > Thanks. > Sincerely, > Anamika > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
