Hi Mali, Can you be more specific about how you downloaded the file from the Table Browser? I only see regular (not lifed) version 62 Ensembl genes on the UCSC sacCer2 browser.
Were you by any chance on a mirror site, and not on http://genome.ucsc.edu/? -- Brooke Rhead UCSC Genome Bioinformatics Group On 06/29/11 03:15, mali salmon wrote: > Dear Sir/Madam > I have downloaded a gtf file for yeast ensembl genes from the ucsc table > browser. > According to the description of the table, the locations were "lifted to > sacCer2 from Ensembl version EF 2." > However, when I compare the locations I get to those from ensembl gtf file I > downloaded from ensembl ("Saccharomyces_cerevisiae.EF2. > 62.gtf), I see that there is no difference. > How this could be? I suppose there are some changes between the two builds > Looking forward to your reply > Thanks > Mali > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
