Hi Janina, I think the difference you are seeing is probably due to a different file format being present in the 2009 (hg19) version. Can you give us an example (the group, track, and table from the Table Browser) that fails?
-- Brooke Rhead UCSC Genome Bioinformatics Group On 06/29/11 06:49, Janina Goernemann wrote: > Hello, > I have a problem with the "intersection" function in the table browser, but only with the 2009 version. I already searched previously asked questions for my problem, but did not find an answer. > > I want to pre-select e.g. Chip-Seq data from the genome browser > before sending it to Galaxy so that the file is not too big. To that end I upload my regions of interest as a custom track. > > When using the 2006 version I go to "intersection", choose "custom track" and "All XY records that have an overlap with user track" > This works perfectly, I only retrieve the data for the regions of interest. > > In the 2009 version I basically attempt to do the same thing (intersection has more options here, but the default is the same + I also tried the other possibilities, just to be sure), but it does not seem to work, judging on my output. > > I wonder what goes wrong here - maybe you can help me? > > All the best - Janina > > > _______________________________________________ > Genome maillist - [email protected] > https://lists.soe.ucsc.edu/mailman/listinfo/genome _______________________________________________ Genome maillist - [email protected] https://lists.soe.ucsc.edu/mailman/listinfo/genome
